Sciact
  • EN
  • RU

Computational insight into the crystal structures of cubane and azacubanes Full article

Journal Journal of Molecular Modeling
ISSN: 0948-5023 , E-ISSN: 1610-2940
Output data Year: 2024, Volume: 30, Number: 4, Article number : 93, Pages count : DOI: 10.1007/s00894-024-05891-7
Authors Khakimov D.V. 1 , Svitanko I.V. 1,2 , Pivina T.S. 1
Affiliations
1 N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, 119991, Moscow, Russian Federation
2 HSE University, 101000 Moscow, Russian Federation

Abstract: Context. Using quantum chemistry and atom–atom potential methods, the molecular and crystal structures of cubane 1 and all types of unsubstituted azacubanes 2–22 were calculated. Alternative possible polymorphs of cubane 1 have been proposed. The thermochemical properties of azacubanes in the gas and solid phases were assessed. Thermodynamic aspects of stability are considered, and a significant decrease in stability is revealed upon transition from cubane 1 to octaazacubane 22. It has been shown that the density and energetic properties of azacubanes depend nonlinearly on the number of nitrogen atoms in the structure and the density of octaazacubane 22 at room temperature is 1.546 g  cm−3, which is significantly lower than the previously given estimate. Methods. In this work, DFT calculations were conducted through the software Gaussian 09 using B3LYP functional with basis set aug-cc-PVDZ and the Grimme dispersion correction D2. For crystal structure optimization, the atom–atom potential methods with PMC (packing of molecules in crystal) program were used. Charges for molecular electrostatic potential were f itted by FitMEP, and enthalpies of formation in gas phase were assessed by G3B3.
Cite: Khakimov D.V. , Svitanko I.V. , Pivina T.S.
Computational insight into the crystal structures of cubane and azacubanes
Journal of Molecular Modeling. 2024. V.30. N4. 93 . DOI: 10.1007/s00894-024-05891-7 WOS Scopus OpenAlex
Identifiers:
Web of science: WOS:001173906700001
Scopus: 2-s2.0-85186538910
OpenAlex: W4392372444
Citing:
DB Citing
OpenAlex 9
Scopus 3
Web of science 4
Altmetrics: