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21
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Sofya I Scherbinina
, Philip V Toukach
Three-Dimensional Structures of Carbohydrates and Where to Find Them
International Journal of Molecular Sciences. 2020.
V.21. N20. 7702
. DOI: 10.3390/ijms21207702
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22
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Stroylov V.
, Panova M.
, Toukach P.
Comparison of Methods for Bulk Automated Simulation of Glycosidic Bond Conformations
International Journal of Molecular Sciences. 2020.
V.21. N20. 7626
. DOI: 10.3390/ijms21207626
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23
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Shakhmatov E.G.
, Toukach P.V.
, Makarova E.N.
Structural studies of the pectic polysaccharide from fruits of Punica granatum
Carbohydrate Polymers. 2020.
V.235. 115978
. DOI: 10.1016/j.carbpol.2020.115978
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24
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Egorova K.S.
, Smirnova N.S.
, Toukach P.V.
CSDB_GT, a curated glycosyltransferase database with close-to-full coverage on three most studied nonanimal species
Glycobiology. 2020.
V.31. N5. P.524-529. DOI: 10.1093/glycob/cwaa107
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25
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Toukach P.V.
, Egorova K.S.
New Features of Carbohydrate Structure Database Notation (CSDB Linear), As Compared to Other Carbohydrate Notations
Journal of Chemical Information and Modeling. 2020.
V.60. N3. P.1276-1289. DOI: 10.1021/acs.jcim.9b00744
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26
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Sizova O.V.
, Shashkov A.S.
, Toukach P.V.
, Knirel Y.A.
, Shaikhutdinova R.Z.
, Ivanov S.A.
, Kislichkina A.A.
, Dentovskaya S.V.
Structure elucidation and gene cluster characterization of the O-antigen of Yersinia kristensenii С-134
Carbohydrate Research. 2019.
V.481. P.9-15. DOI: 10.1016/j.carres.2019.06.001
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27
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Neelamegham S.
, Aoki-Kinoshita K.
, Bolton E.
, Frank M.
, Lisacek F.
, Lütteke T.
, O’Boyle N.
, Packer N.
, Stanley P.
, Toukach P.
, Varki A.
, Woods R.J.
, Darvill A.
, Dell A.
, Henrissat B.
, Bertozzi C.
, Hart G.
, Narimatsu H.
, Freeze H.
, Yamada I.
, Paulson J.
, Prestegard J.
, Marth J.
, Vliegenthart J.F.G.
, Etzler M.
, Aebi M.
, Kanehisa M.
, Taniguchi N.
, Edwards N.
, Rudd P.
, Seeberger P.
, Mazumder R.
, Ranzinger R.
, Cummings R.
, Schnaar R.
, Perez S.
, Kornfeld S.
, Kinoshita T.
, York W.
, Knirel Y.
Updates to the Symbol Nomenclature for Glycans guidelines
Glycobiology. 2019.
V.29. N9. P.620-624. DOI: 10.1093/glycob/cwz045
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28
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Sigida E.N.
, Fedonenko Y.P.
, Shashkov A.S.
, Toukach P.V.
, Shelud'ko A.V.
, Zdorovenko E.L.
, Knirel Y.A.
, Konnova S.A.
Structural studies of O-specific polysaccharide(s) and biological activity toward plants of the lipopolysaccharide from Azospirillum brasilense SR8
International Journal of Biological Macromolecules. 2019.
V.126. P.246-253. DOI: 10.1016/j.ijbiomac.2018.12.229
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29
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Sizova O.V.
, Shashkov A.S.
, Dmitrenok A.S.
, Toukach P.V.
, Knirel Y.A.
, Shaikhutdinova R.Z.
, Ivanov S.A.
, Kislichkina A.A.
, Bogun A.G.
, Dentovskaya S.V.
Structure and gene cluster of the O-polysaccharide of Yersinia rohdei H274-36/78
International Journal of Biological Macromolecules. 2019.
V.122. P.555-561. DOI: 10.1016/j.ijbiomac.2018.10.189
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30
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Egorova K.S.
, Knirel Y.A.
, Toukach P.V.
Expanding CSDB_GT glycosyltransferase database with Escherichia coli
Glycobiology. 2019.
V.29. N4. P.285-287. DOI: 10.1093/glycob/cwz006
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31
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Alocci D.
, Suchánková P.
, Costa R.
, Hory N.
, Mariethoz J.
, Vařeková R.S.
, Toukach P.
, Lisacek F.
SugarSketcher: Quick and Intuitive Online Glycan Drawing
Molecules. 2018.
V.23. N12. 3206
. DOI: 10.3390/molecules23123206
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32
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Chernyshov I.Y.
, Toukach P.V.
REStLESS: automated translation of glycan sequences from residue-based notation to SMILES and atomic coordinates
Bioinformatics. 2018.
V.34. N15. P.2679-2681. DOI: 10.1093/bioinformatics/bty168
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33
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Egorova K.S.
, Toukach P.V.
Glycoinformatics: Bridging Isolated Islands in the Sea of Data
Angewandte Chemie International Edition. 2018.
V.57. N46. P.14986-14990. DOI: 10.1002/anie.201803576
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34
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Kapaev R.R.
, Toukach P.V.
GRASS: semi-automated NMR-based structure elucidation of saccharides
Bioinformatics. 2017.
V.34. N6. P.957-963. DOI: 10.1093/bioinformatics/btx696
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35
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Egorova K.S.
, Toukach P.V.
CSDB_GT: a new curated database on glycosyltransferases
Glycobiology. 2017.
V.27. N4. P.285-290. DOI: 10.1093/glycob/cww137
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36
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Egorova K.S.
, Toukach P.V.
Carbohydrate Structure Database (CSDB): Examples of Usage
In compilation
A Practical Guide to Using Glycomics Databases.
– Springer Tokyo.,
2016.
– C.75-113. – ISBN 978-4-431-56454-6. DOI: 10.1007/978-4-431-56454-6_5
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37
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Toukach P.V.
, Egorova K.S.
Carbohydrate structure database merged from bacterial, archaeal, plant and fungal parts
Nucleic Acids Research. 2016.
V.44. ND1. P.D1229-D1236. DOI: 10.1093/nar/gkv840
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38
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Kapaev R.R.
, Toukach P.V.
Simulation of 2D NMR Spectra of Carbohydrates Using GODESS Software
Journal of Chemical Information and Modeling. 2016.
V.56. N6. P.1100-1104. DOI: 10.1021/acs.jcim.6b00083
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39
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Kapaev R.R.
, Toukach P.V.
Improved Carbohydrate Structure Generalization Scheme for 1H and 13C NMR Simulations
Analytical Chemistry. 2015.
V.87. N14. P.7006-7010. DOI: 10.1021/acs.analchem.5b01413
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40
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Varki A.
, Cummings R.D.
, Aebi M.
, Packer N.H.
, Seeberger P.H.
, Esko J.D.
, Stanley P.
, Hart G.
, Darvill A.
, Kinoshita T.
, Prestegard J.J.
, Schnaar R.L.
, Freeze H.H.
, Marth J.D.
, Bertozzi C.R.
, Etzler M.E.
, Frank M.
, Vliegenthart J.F.
, Lütteke T.
, Perez S.
, Bolton E.
, Rudd P.
, Paulson J.
, Kanehisa M.
, Toukach P.
, Aoki-Kinoshita K.F.
, Dell A.
, Narimatsu H.
, York W.
, Taniguchi N.
, Kornfeld S.
Symbol Nomenclature for Graphical Representations of Glycans
Glycobiology. 2015.
V.25. N12. P.1323-1324. DOI: 10.1093/glycob/cwv091
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