Научная деятельность
Статьи (42) Подробнее
| 1 |
Kasimova A.A.
, Shashkov A.S.
, Shneider M.M.
, Sheck E.A.
, Mikhailova Y.V.
, Shelenkov A.A.
, Popova A.V.
, Knirel Y.A.
, Kenyon J.J.
The Acinetobacter baumannii K239 capsular polysaccharide includes heptasaccharide units that are structurally related to K86 but joined by different linkages formed by different Wzy polymerases International Journal of Biological Macromolecules. 2024. 130045 . DOI: 10.1016/j.ijbiomac.2024.130045 WOS Scopus OpenAlex |
| 2 |
Arbatsky N.P.
, Kasimova A.A.
, Shashkov A.S.
, Shneider M.M.
, Popova A.V.
, Perepelov A.V.
, Hall R.M.
, Kenyon J.J.
, Knirel Y.A.
Revised structure of the polysaccharide from Acinetobacter baumannii LUH5551 assigned as the K63 type capsular polysaccharide Carbohydrate Research. 2024. V.535. 109020 . DOI: 10.1016/j.carres.2023.109020 WOS Scopus OpenAlex |
| 3 |
Kasimova A.A.
, Kolganova A.S.
, Shashkov A.S.
, Shneider M.M.
, Mikhailova Y.V.
, Shelenkov A.A.
, Popova A.V.
, Knirel Y.A.
, Perepelov A.V.
, Kenyon J.J.
Structure of the K141 capsular polysaccharide produced by Acinetobacter baumannii isolate KZ1106 that carries KL141 at the chromosomal K locus Carbohydrate Research. 2024. V.538. 109097 :1-1. DOI: 10.1016/j.carres.2024.109097 WOS Scopus OpenAlex |
| 4 |
Evseev P.V.
, Shneider M.M.
, Kolupaeva L.V.
, Kasimova A.A.
, Timoshina O.Y.
, Perepelov A.V.
, Shpirt A.M.
, Shelenkov A.A.
, Mikhailova Y.V.
, Suzina N.E.
, Knirel Y.A.
, Miroshnikov K.A.
, Popova A.V.
New Obolenskvirus Phages Brutus and Scipio: Biology, Evolution, and Phage-Host Interaction International Journal of Molecular Sciences. 2024. V.25. N4. 2074 . DOI: 10.3390/ijms25042074 WOS Scopus OpenAlex |
| 5 |
Evseev P.
, Gutnik D.
, Evpak A.
, Kasimova A.
, Miroshnikov K.
Origin, Evolution and Diversity of φ29-like Phages—Review and Bioinformatic Analysis International Journal of Molecular Sciences. 2024. V.25. N19. 10838 . DOI: 10.3390/ijms251910838 WOS Scopus OpenAlex |
| 6 |
Arbatsky N.P.
, Shashkov A.S.
, Shneider M.M.
, Mikhailova Y.V.
, Shelenkov A.A.
, Sheck E.A.
, Kasimova A.A.
, Kalinchuk N.A.
, Kenyon J.J.
, Knirel Y.A.
The K129 capsular polysaccharide produced by Acinetobacter baumannii MAR 15-4076 has the same composition as K84 but differs in the linkage between units altering the overall branching topology Carbohydrate Research. 2024. V.545. 109273 . DOI: 10.1016/j.carres.2024.109273 WOS Scopus OpenAlex |
| 7 |
Shashkov A.S.
, Arbatsky N.P.
, Senchenkova S.N.
, Kasimova A.A.
, Dmitrenok A.S.
, Shneider M.M.
, Knirel Y.A.
, Hall R.M.
, Kenyon J.J.
Characterization of the carbapenem-resistant Acinetobacter baumannii clinical reference isolate BAL062 (CC2:KL58:OCL1): resistance properties and capsular polysaccharide structure mSystems. 2024. V.9. N10. e00941-24 . DOI: 10.1128/msystems.00941-24 WOS OpenAlex |
| 8 |
Shpirt A.M.
, Harmer C.J.
, Shashkov A.S.
, Shneider M.M.
, Chizhov A.O.
, Dmitrenok A.S.
, Popova A.V.
, Kasimova A.A.
, Perepelov A.V.
, Knirel Y.A.
, Hall R.M.
, Kenyon J.J.
An Acinetobacter baumannii nasal carriage isolate recovered from an asymptomatic patient in Vietnam is extensively antibiotic resistant and produces a rare K71 type capsule Microbiology spectrum. 2024. V.12. N12. е01838-24 . DOI: 10.1128/spectrum.01838-24 WOS OpenAlex |
| 9 |
Iovine A.
, Filatov A.V.
, Kasimova A.A.
, Sharar N.S.
, Ambrose S.J.
, Dmitrenok A.S.
, Shneider M.M.
, Shpirt A.M.
, Perepelov A.V.
, Knirel Y.A.
, Hall R.M.
, De Castro C.
, Kenyon J.J.
Structure of the K58 capsular polysaccharide produced by Acinetobacter baumannii isolate MRSN 31468 includes Pse5Ac7Ac that is 4-O-acetylated by a phage-encoded acetyltransferase Carbohydrate Research. 2024. V.547. 109324 . DOI: 10.1016/j.carres.2024.109324 WOS OpenAlex |
| 10 |
Kasimova A.A.
, Shashkov A.S.
, Perepelov A.V.
, Babich T.
, Demina L.
, Popova N.
, Krivonos D.
, Safonov A.
Structure elucidation and gene cluster of the O-antigen of Shewanella xiamenensis strain DCB-2-1 containing an amide of d-glucuronic acid with d-alanine and its bonding with U, Cr and V International Journal of Biological Macromolecules. 2023. 127546 :1-10. DOI: 10.1016/j.ijbiomac.2023.127546 WOS Scopus OpenAlex |
| 11 |
Timoshina O.Y.
, Kasimova A.A.
, Shneider M.M.
, Arbatsky N.P.
, Shashkov A.S.
, Shelenkov A.A.
, Mikhailova Y.V.
, Popova A.V.
, Hall R.M.
, Knirel Y.A.
, Kenyon J.J.
Loss of a Branch Sugar in the Acinetobacter baumannii K3-Type Capsular Polysaccharide Due To Frameshifts in the gtr6 Glycosyltransferase Gene Leads To Susceptibility To Phage APK37.1 Microbiology spectrum. 2023. V.11. N1. DOI: 10.1128/spectrum.03631-22 WOS Scopus OpenAlex |
| 12 |
Kasimova A.A.
, Shneider M.M.
, Evseev P.V.
, Shelenkov A.A.
, Mikhailova Y.V.
, Miroshnikov K.A.
, Chebotar I.V.
, Shagin D.A.
The structure of Klebsiella pneumoniae K108 capsular polysaccharide is similar to Escherichia coli colanic acid International Journal of Biological Macromolecules. 2023. V.244. 125403 . DOI: 10.1016/j.ijbiomac.2023.125403 WOS Scopus OpenAlex |
| 13 |
Timoshina O.Y.
, Kasimova A.A.
, Shneider M.M.
, Matyuta I.O.
, Nikolaeva A.Y.
, Evseev P.V.
, Arbatsky N.P.
, Shashkov A.S.
, Chizhov A.O.
, Shelenkov A.A.
, Mikhaylova Y.V.
, Slukin P.V.
, Volozhantsev N.V.
, Boyko K.M.
, Knirel Y.A.
, Miroshnikov K.A.
, Popova A.V.
Friunavirus Phage-Encoded Depolymerases Specific to Different Capsular Types of Acinetobacter baumannii International Journal of Molecular Sciences. 2023. V.24. N10. 9100 . DOI: 10.3390/ijms24109100 WOS Scopus OpenAlex |
| 14 |
Lukianova A.A.
, Shneider M.M.
, Evseev P.V.
, Egorov M.V.
, Kasimova A.A.
, Shpirt A.M.
, Shashkov A.S.
, Knirel Y.A.
, Kostryukova E.S.
, Miroshnikov K.A.
Depolymerisation of the Klebsiella pneumoniae Capsular Polysaccharide K21 by Klebsiella Phage K5 International Journal of Molecular Sciences. 2023. V.24. N24. 17288 . DOI: 10.3390/ijms242417288 WOS Scopus OpenAlex |
| 15 |
Knirel Y.A.
, Kasimova A.A.
, Arbatsky N.P.
, Shneider M.M.
, Popova A.V.
, Brovko F.A.
, Shashkov A.S.
, Senchenkova S.N.
, Perepelov A.V.
, Shpirt A.M.
5,7-Diamino-3,5,7,9-tetradeoxynon-2-ulosonic Acids in the Capsular Polysaccharides of Acinetobacter baumannii Biokhimiya. 2023. V.88. N2. P.202-210. DOI: 10.1134/s0006297923020049 WOS Scopus OpenAlex |
| 16 |
Shashkov A.S.
, Kasimova A.A.
, Arbatsky N.P.
, Senchenkova S.N.
, Perepelov A.V.
, Dmitrenok A.S.
, Chizhov A.O.
, Knirel Y.A.
, Shneider M.M.
, Popova A.V.
, Kenyon J.J.
Complete chemical structure of the K135 capsular polysaccharide produced by Acinetobacter baumannii RES-546 that contains 5,7-di-N-acetyl-8-epipseudaminic acid Carbohydrate Research. 2023. V.523. 108726 . DOI: 10.1016/j.carres.2022.108726 WOS Scopus OpenAlex |
| 17 |
Kasimova A.A.
, Sharar N.S.
, Ambrose S.J.
, Knirel Y.A.
, Shneider M.M.
, Timoshina O.Y.
, Popova A.V.
, Perepelov A.V.
, Dmitrenok A.S.
, Hsu L.Y.
, Hall R.M.
, Kenyon J.J.
The Acinetobacter baumannii K70 and K9 capsular polysaccharides consist of related K-units linked by the same Wzy polymerase and cleaved by the same phage depolymerases Microbiology spectrum. 2023. V.11. N6. e03025-23 . DOI: 10.1128/spectrum.03025-23 WOS Scopus OpenAlex |
| 18 |
Kasimova A.A.
, Dudnik A.G.
, Shashkov A.S.
, Shneider M.M.
, Christofferson A.
, Shelenkov A.A.
, Mikhailova Y.V.
, Kenyon J.J.
, Knirel Y.A.
The K218 capsular polysaccharide produced by Acinetobacter baumannii isolate 52-249 includes 5,7-di-N-acetylpseudaminic acid linked by a KpsS3 glycosyltransferase International Journal of Biological Macromolecules. 2022. V.218. P.310-316. DOI: 10.1016/j.ijbiomac.2022.07.135 WOS Scopus OpenAlex |
| 19 |
Arbatsky N.P.
, Shashkov A.S.
, Shneider M.M.
, Popova A.V.
, Kasimova A.A.
, Miroshnikov K.A.
, Knirel Y.A.
, Hall R.M.
, Kenyon J.J.
The K89 capsular polysaccharide produced by Acinetobacter baumannii LUH5552 consists of a pentameric repeat-unit that includes a 3-acetamido-3,6-dideoxy-d-galactose residue International Journal of Biological Macromolecules. 2022. V.217. P.515-521. DOI: 10.1016/j.ijbiomac.2022.07.085 WOS Scopus OpenAlex |
| 20 |
Drobiazko A.Y.
, Kasimova А.A.
, Evseev P.V.
, Shneider M.M.
, Klimuk E.I.
, Shashkov A.S.
, Dmitrenok A.S.
, Chizhov A.O.
, Slukin P.V.
, Skryabin Y.P.
, Volozhantsev N.V.
, Miroshnikov K.A.
, Knirel Y.A.
, Popova A.V.
Capsule-Targeting Depolymerases Derived from Acinetobacter baumannii Prophage Regions International Journal of Molecular Sciences. 2022. V.23. N9. 4971 . DOI: 10.3390/ijms23094971 WOS Scopus OpenAlex |
| 21 |
Arbatsky N.P.
, Kasimova A.A.
, Shashkov A.S.
, Shneider M.M.
, Popova A.V.
, Shagin D.A.
, Shelenkov A.A.
, Mikhailova Y.V.
, Yanushevich Y.G.
, Hall R.M.
, Knirel Y.A.
, Kenyon J.J.
Involvement of a Phage-Encoded Wzy Protein in the Polymerization of K127 Units To Form the Capsular Polysaccharide of Acinetobacter baumannii Isolate 36-1454 Microbiology spectrum. 2022. V.10. N3. e01503-21 . DOI: 10.1128/spectrum.01503-21 WOS Scopus OpenAlex |
| 22 |
Rudenko N.
, Karatovskaya A.
, Zamyatina A.
, Shepelyakovskaya A.
, Semushina S.
, Brovko F.
, Shpirt A.
, Torgov V.
, Kolotyrkina N.
, Zinin A.
, Kasimova A.
, Perepelov A.
, Shneider M.
, Knirel Y.
Immune Response to Conjugates of Fragments of the Type K9 Capsular Polysaccharide of Acinetobacter baumannii with Carrier Proteins Microbiology spectrum. 2022. V.10. N5. e01674-22 . DOI: 10.1128/spectrum.01674-22 WOS Scopus OpenAlex |
| 23 |
Perepelov A.V.
, Sokolova D.S.
, Tourova T.P.
, Shashkov A.S.
, Kasimova A.A.
, Nazina T.N.
Structure elucidation and gene cluster annotation of the O-antigen of Halomonas titanicae TAT1 containing three residues of 2,3-diacetamido-2,3-dideoxy-D-glucuronic acid Carbohydrate Research. 2022. V.521. 108650 . DOI: 10.1016/j.carres.2022.108650 WOS Scopus OpenAlex |
| 24 |
Kasimova A.A.
, Shneider M.M.
, Edelstein M.V.
, Dzhaparova A.A.
, Shashkov A.S.
, Knirel Y.A.
, Kenyon J.J.
Structure of the K98 capsular polysaccharide from Acinetobacter baumannii REV-1184 containing a cyclic pyruvic acid acetal International Journal of Biological Macromolecules. 2022. V.218. P.447-455. DOI: 10.1016/j.ijbiomac.2022.07.136 WOS Scopus OpenAlex |
| 25 |
Popova A.V.
, Shneider M.M.
, Arbatsky N.P.
, Kasimova A.A.
, Senchenkova S.N.
, Shashkov A.S.
, Dmitrenok A.S.
, Chizhov A.O.
, Mikhailova Y.V.
, Shagin D.A.
, Sokolova O.S.
, Timoshina O.Y.
, Kozlov R.S.
, Miroshnikov K.A.
, Knirel Y.A.
Specific Interaction of NovelFriunavirusPhages Encoding Tailspike Depolymerases with Corresponding Acinetobacter baumannii Capsular Types Journal of Virology. 2021. V.95. N5. e01714-20 . DOI: 10.1128/jvi.01714-20 WOS OpenAlex |
| 26 |
Kasimova A.A.
, Arbatsky N.P.
, Timoshina O.Y.
, Shneider M.M.
, Shashkov A.S.
, Chizhov A.O.
, Popova A.V.
, Hall R.M.
, Kenyon J.J.
, Knirel Y.A.
The K26 capsular polysaccharide from Acinetobacter baumannii KZ-1098: Structure and cleavage by a specific phage depolymerase International Journal of Biological Macromolecules. 2021. V.191. P.182-191. DOI: 10.1016/j.ijbiomac.2021.09.073 WOS Scopus OpenAlex |
| 27 |
Timoshina O.Y.
, Shneider M.M.
, Evseev P.V.
, Shchurova A.S.
, Shelenkov A.A.
, Mikhaylova Y.V.
, Sokolova O.S.
, Kasimova A.A.
, Arbatsky N.P.
, Dmitrenok A.S.
, Knirel Y.A.
, Miroshnikov K.A.
, Popova A.V.
Novel Acinetobacter baumannii Bacteriophage Aristophanes Encoding Structural Polysaccharide Deacetylase Viruses. 2021. V.13. N9. 1688 . DOI: 10.3390/v13091688 WOS Scopus OpenAlex |
| 28 |
Kenyon J.J.
, Kasimova A.A.
, Sviridova A.N.
, Shpirt A.M.
, Shneider M.M.
, Mikhaylova Y.V.
, Shelenkov A.A.
, Popova A.V.
, Perepelov A.V.
, Shashkov A.S.
, Dmitrenok A.S.
, Chizov A.O.
, Knirel Y.A.
Correlation of Acinetobacter baumannii K144 and K86 capsular polysaccharide structures with genes at the K locus reveals the involvement of a novel multifunctional rhamnosyltransferase for structural synthesis International Journal of Biological Macromolecules. 2021. V.193. P.1294-1300. DOI: 10.1016/j.ijbiomac.2021.10.178 WOS Scopus OpenAlex |
| 29 |
Kasimova A.A.
, Arbatsky N.P.
, Tickner J.
, Kenyon J.J.
, Hall R.M.
, Shneider M.M.
, Dzhaparova A.A.
, Shashkov A.S.
, Chizhov A.O.
, Popova A.V.
, Knirel Y.A.
Acinetobacter baumannii K106 and K112: Two Structurally and Genetically Related 6-Deoxy-l-talose-Containing Capsular Polysaccharides International Journal of Molecular Sciences. 2021. V.22. N11. 5641 . DOI: 10.3390/ijms22115641 WOS Scopus OpenAlex |
| 30 |
Kasimova A.A.
, Cahill S.M.
, Shpirt A.M.
, Dudnik A.G.
, Shneider M.M.
, Popova A.V.
, Shelenkov A.A.
, Mikhailova Y.V.
, Chizhov A.O.
, Kenyon J.J.
, Knirel Y.A.
The K139 capsular polysaccharide produced by Acinetobacter baumannii MAR17-1041 belongs to a group of related structures including K14, K37 and K116 International Journal of Biological Macromolecules. 2021. V.193. P.2297-2303. DOI: 10.1016/j.ijbiomac.2021.11.062 WOS Scopus OpenAlex |
| 31 |
Knirel Y.A.
, Shneider M.M.
, Popova A.V.
, Kasimova A.A.
, Senchenkova S.N.
, Shashkov A.S.
, Chizhov A.O.
Mechanisms of Acinetobacter baumannii Capsular Polysaccharide Cleavage by Phage Depolymerases Biokhimiya. 2020. V.85. N5. P.567-574. DOI: 10.1134/s0006297920050053 WOS Scopus OpenAlex |
| 32 |
Arbatsky N.P.
, Kenyon J.J.
, Kasimova A.A.
, Shashkov A.S.
, Shneider M.M.
, Popova A.V.
, Knirel Y.A.
, Hall R.M.
K units of the K8 and K54 capsular polysaccharides produced by Acinetobacter baumannii BAL 097 and RCH52 have the same structure but contain different di-N-acyl derivatives of legionaminic acid and are linked differently Carbohydrate Research. 2019. V.483. 107745 . DOI: 10.1016/j.carres.2019.107745 WOS Scopus OpenAlex |
| 33 |
Shashkov A.S.
, Cahill S.M.
, Arbatsky N.P.
, Westacott A.C.
, Kasimova A.A.
, Shneider M.M.
, Popova A.V.
, Shagin D.A.
, Shelenkov A.A.
, Mikhailova Y.V.
, Yanushevich Y.G.
, Edelstein M.V.
, Kenyon J.J.
, Knirel Y.A.
Acinetobacter baumannii K116 capsular polysaccharide structure is a hybrid of the K14 and revised K37 structures Carbohydrate Research. 2019. V.484. 107774 . DOI: 10.1016/j.carres.2019.107774 WOS Scopus OpenAlex |
| 34 |
Senchenkova S.N.
, Kenyon J.J.
, Jia T.
, Popova A.V.
, Shneider M.M.
, Kasimova A.A.
, Shashkov A.S.
, Liu B.
, Hall R.M.
, Knirel Y.A.
The K90 capsular polysaccharide produced by Acinetobacter baumannii LUH5553 contains di-N-acetylpseudaminic acid and is structurally related to the K7 polysaccharide from A. baumannii LUH5533 Carbohydrate Research. 2019. V.479. P.1-5. DOI: 10.1016/j.carres.2019.04.008 WOS Scopus OpenAlex |
| 35 |
Kenyon J.J.
, Arbatsky N.P.
, Shneider M.M.
, Popova A.V.
, Dmitrenok A.S.
, Kasimova A.A.
, Shashkov A.S.
, Hall R.M.
, Knirel Y.A.
The K46 and K5 capsular polysaccharides produced by Acinetobacter baumannii NIPH 329 and SDF have related structures and the side-chain non-ulosonic acids are 4-O-acetylated by phage-encoded O-acetyltransferases PLOS ONE. 2019. V.14. N6. e0218461 . DOI: 10.1371/journal.pone.0218461 WOS Scopus OpenAlex |
| 36 |
Arbatsky N.P.
, Kasimova A.A.
, Shashkov A.S.
, Shneider M.M.
, Popova A.V.
, Shagin D.A.
, Shelenkov A.A.
, Mikhailova Y.V.
, Yanushevich Y.G.
, Azizov I.S.
, Edelstein M.V.
, Hall R.M.
, Kenyon J.J.
, Knirel Y.A.
Structure of the K128 capsular polysaccharide produced by Acinetobacter baumannii KZ-1093 from Kazakhstan Carbohydrate Research. 2019. V.485. 107814 . DOI: 10.1016/j.carres.2019.107814 WOS Scopus OpenAlex |
| 37 |
Kasimova A.
, Kenyon J.
, Arbatsky N.
, Shashkov A.
, Popova A.
, Knirel Y.
, Hall R.
Structure of the K82 Capsular Polysaccharide from Acinetobacter baumannii LUH5534 Containing a d-Galactose 4,6-Pyruvic Acid Acetal Biokhimiya. 2018. V.83. N7. P.831-835. DOI: 10.1134/s0006297918070064 WOS Scopus OpenAlex |
| 38 |
Kasimova A.A.
, Kenyon J.J.
, Arbatsky N.P.
, Shashkov A.S.
, Popova A.V.
, Shneider M.M.
, Knirel Y.A.
, Hall R.M.
Acinetobacter baumannii K20 and K21 capsular polysaccharide structures establish roles for UDP-glucose dehydrogenase Ugd2, pyruvyl transferase Ptr2 and two glycosyltransferases Glycobiology. 2018. V.28. N11. P.876-884. DOI: 10.1093/glycob/cwy074 WOS Scopus OpenAlex |
| 39 |
Kenyon J.J.
, Kasimova A.A.
, Shashkov A.S.
, Hall R.M.
, Knirel Y.A.
Acinetobacter baumannii isolate BAL_212 from Vietnam produces the K57 capsular polysaccharide containing a rarely occurring amino sugar N-acetylviosamine Microbiology (UK). 2018. V.164. N2. P.217-220. DOI: 10.1099/mic.0.000598 WOS Scopus OpenAlex |
| 40 |
Kenyon J.J.
, Kasimova A.A.
, Shneider M.M.
, Shashkov A.S.
, Arbatsky N.P.
, Popova A.V.
, Miroshnikov K.A.
, Hall R.M.
, Knirel Y.A.
The KL24 gene cluster and a genomic island encoding a Wzy polymerase contribute genes needed for synthesis of the K24 capsular polysaccharide by the multiply antibiotic resistant Acinetobacter baumannii isolate RCH51 Microbiology (UK). 2017. V.163. N3. P.355-363. DOI: 10.1099/mic.0.000430 WOS Scopus OpenAlex |
| 41 |
Kenyon J.J.
, Kasimova A.A.
, Notaro A.
, Arbatsky N.P.
, Speciale I.
, Shashkov A.S.
, De Castro C.
, Hall R.M.
, Knirel Y.A.
Acinetobacter baumannii K13 and K73 capsular polysaccharides differ only in K-unit side branches of novel non-2-ulosonic acids: di- N -acetylated forms of either acinetaminic acid or 8-epiacinetaminic acid Carbohydrate Research. 2017. V.452. P.149-155. DOI: 10.1016/j.carres.2017.10.005 WOS Scopus OpenAlex |
| 42 |
Kasimova A.A.
, Shneider M.M.
, Arbatsky N.P.
, Popova A.V.
, Shashkov A.S.
, Miroshnikov K.A.
, Balaji V.
, Biswas I.
, Knirel Y.A.
Structure and gene cluster of the K93 capsular polysaccharide of Acinetobacter baumannii B11911 containing 5-N-Acetyl-7-N-[(R)-3-hydroxybutanoyl]pseudaminic acid Biokhimiya. 2017. V.82. N4. P.483-489. DOI: 10.1134/s0006297917040101 WOS Scopus OpenAlex |